CHOP Microbiome Center Publications

American Journal Of Transplantation : Official Journal Of The American Society Of Transplantation And The American Society Of Transplant Surgeons · April, 2019

Clinical and biological predictors of response to standardised paediatric colitis therapy (PROTECT): a multicentre inception cohort study

Lancet (London, England) · April, 2019

Innate lymphoid cells support regulatory T cells in the intestine through interleukin-2

Nature · April, 2019

De-Discovery of the Placenta Microbiome

American Journal Of Obstetrics And Gynecology · March, 2019

A screen of Crohn's disease-associated microbial metabolites identifies ascorbate as a novel metabolic inhibitor of activated human T cells

Mucosal Immunology · March, 2019

Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments

Microbiome · March, 2019

Ulcerative colitis mucosal transcriptomes reveal mitochondriopathy and personalized mechanisms underlying disease severity and treatment response

Nature Communications · January, 2019

Population structure of human gut bacteria in a diverse cohort from rural Tanzania and Botswana

Genome Biology · January, 2019

2018

T cell dynamics and response of the microbiota after gene therapy to treat X-linked severe combined immunodeficiency

Genome Medicine · September, 2018

Toxin-positive Clostridium difficile latently infect mouse colonies and protect against highly pathogenic C. difficile

Gut · May, 2018

Allometry and Ecology of the Bilaterian Gut Microbiome

MBio · March, 2018

Gut microbiota modulates adoptive cell therapy via CD8α dendritic cells and IL-12

JCI Insight · February, 2018

Destabilization of the gut microbiome marks the end-stage of simian immunodeficiency virus infection in wild chimpanzees

American Journal Of Primatology · January, 2018

Microbial Lineages in Sarcoidosis. A Metagenomic Analysis Tailored for Low-Microbial Content Samples

American Journal Of Respiratory And Critical Care Medicine · January, 2018

Enterotypes in the landscape of gut microbial community composition

Nature Microbiology · January, 2018

Lack of Detection of a Human Placenta Microbiome in Samples from Preterm and Term Deliveries

Microbiome · January, 2018

2017

Functional imaging of the interaction between gut microbiota and the human host: A proof-of-concept clinical study evaluating novel use for 18F-FDG PET-CT

PloS One · December, 2017

Evaluation of a therapy for Idiopathic Chronic Enterocolitis in rhesus macaques (Macaca mulatta) and linked microbial community correlates

PeerJ · December, 2017

A Pilot Characterization of the Human Chronobiome

Scientific Reports · December, 2017

A role for bacterial urease in gut dysbiosis and Crohn's disease

Science Translational Medicine · November, 2017

Colonic Microbiota Encroachment Correlates With Dysglycemia in Humans

Cellular And Molecular Gastroenterology And Hepatology · September, 2017

Increasing Incidence of Multiply Recurrent Clostridium difficile Infection in the United States: A Cohort Study

Annals Of Internal Medicine · August, 2017

Association Between Breast Milk Bacterial Communities and Establishment and Development of the Infant Gut Microbiome

JAMA Pediatrics · July, 2017

A Model-Based Approach For Species Abundance Quantification Based On Shotgun Metagenomic Data

Statistics In Biosciences · June, 2017

The Perioperative Lung Transplant Virome: Torque Teno Viruses Are Elevated in Donor Lungs and Show Divergent Dynamics in Primary Graft Dysfunction

American Journal Of Transplantation : Official Journal Of The American Society Of Transplantation And The American Society Of Transplant Surgeons · May, 2017

Genome Sequence of a Toxin-Positive Clostridium difficile Strain Isolated from Murine Feces

Genome Announcements · April, 2017

Associations of the vaginal microbiota with HIV infection, bacterial vaginosis, and demographic factors

AIDS (London, England) · April, 2017

Diet as a Trigger or Therapy for Inflammatory Bowel Diseases

Gastroenterology · February, 2017

Human and rat gut microbiome composition is maintained following sleep restriction

Proceedings Of The National Academy Of Sciences Of The United States Of America · February, 2017

Optimizing methods and dodging pitfalls in microbiome research

Microbiome · January, 2017