Single Cell Technology Core Data Analysis Services

Children's Hospital of Philadelphia is excited to announce our Single Cell Technology Core data analysis services, now available to support the CHOP/UPenn research community.

Our expert bioinformaticians provide consultation services such as experiment design and hypothesis testing. We have developed robust workflows for efficient data processing. We also offer customized analyses, tools, and metrics for data sets of any size.

The Single Cell Technology Core has expertise in 10x genomics technologies such as:

• scRNA-seq
• scATAC-seq
• Single-cell immune profiling

We also work with data from spatial biology platforms:

• PhenoCycler (CODEX)
• MERSCOPE
• GeoMx DSP"

Single Cell Services

• Data integration
• Batch correction
• Differential gene expression and peak analysis
• Cell trajectory inference
• Motif and gene set enrichment
• And many more!

Spatial Biology Services

• Cell segmentation
• Neighborhood composition and enrichment
• Interaction probabilities
• Differential spatial expression

For manuscript submission, our experienced bioinformaticians are proficient in a range of design tools such as Adobe Illustrator to create publication-ready figures.

Contact us at CSCBcoreservices@chop.edu today to learn more about our services and schedule a consultation.